PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G292600.1
Common NameB456_004G292600, LOC105793019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 192aa    MW: 21148.1 Da    PI: 8.6596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G292600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18555155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Gorai.004G292600.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                        59*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-23565No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SMARTSM003801.1E-38669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32663IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-20664IPR016177DNA-binding domain
PfamPF008472.1E-11655IPR001471AP2/ERF domain
PRINTSPR003672.9E-10718IPR001471AP2/ERF domain
PRINTSPR003672.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPPATAHKD DSPLPPKALS ELLNAKLKKC CKDQSPSLTC LRLDTDNAHI GVWQKRAGTR  120
SSSSWVMRVD LGNKKTTTPP SEDGPALSSP PIADEIEGES HVLGEEDRIA LQMIEELLNW  180
NCPMVSTSSG V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16263163ATERF1
3gcc_A3e-16263163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477402.11e-141PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9583e-79SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0D2PK811e-141A0A0D2PK81_G
STRINGVIT_04s0008g05440.t012e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.15e-72ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]